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Update README.md
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Akmazad committed Nov 2, 2020
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Expand Up @@ -41,7 +41,7 @@ We dropped rows for which there are no more than 1 sample peaks found by using [
This filtered peak matrices can be augmented with TF features sets using [```Merge_binned_TF_profiles_with_other_features.sh```](https://github.com/Akmazad/deepBrain/blob/master/Data%20Processing/RNA-seq/Merge_binned_TF_profiles_with_other_features.sh) script on Raijin *hugemem* queue.

## Bin overlapping
Next, we need to intersect each peaks with chromosomal bins of fixed-width. Following commands were used to get it done.
Next, we need to intersect each peaks with chromosomal bins of fixed-width. Following commands were used to get it done. Please use ```module load bedtools``` command prior to run following code

```sh
intersectBed -wao -f 0.05 -a hg19_bins_200bp.bed -b mergedPeakHeightMatrix_HumanFC_filtered.bed > mergedPeakHeightMatrix_HumanFC_filtered.overlaps.bed
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