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Cblaster_stats Public
Parse binary files from Cblaster into more useful information
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Mutations_stats-and-plot Public
Using an alignment file, get conserved region , the statistics of your mutations , and plot them nicely.
Python UpdatedNov 5, 2024 -
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Translate_multifasta_files Public
Translate DNA multiFASTA files into 1st reading frame
Python UpdatedOct 31, 2024 -
download_hmp_data Public
Download Human microbiome project (WGS) data from hmpdacc.org via https
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Nasal_CST_quick_checker Public
Quickly check Community State Type (CSTs) from nasal microbiome data
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MicrobeAnnotator_stats Public
Condense and summarize MicrobeAnnotator metabolic pathway tab files from many genomes into a big heatmap CSV files
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ISEScan_stats Public
Condense and summarize many results form ISEScan into CSV for heatmaps
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Bakta_stats Public
Condense and summarize many results form BAKTA into CSV for statistics
Python UpdatedMay 29, 2024 -
PADLOC_stats Public
Condense and summarize many results form PADLOC into CSV for heatmaps
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HTS_insilico_PCR Public
High throughput In-silico PCR
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Utilizing genomic signatures to gain insights into the dynamics of SARS-CoV-2 through Machine and Deep Learning techniques
HTML UpdatedApr 18, 2024 -
Code-for-RVD-et-al.-2023 Public
Secretory IgA impacts the microbiota density in the human nose
HTML UpdatedOct 25, 2023 -
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For bacterial genomes assembly and annotate
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