John Idarraga [email protected]
Mathieu Benoit [email protected]
Samir Arfaoui R.I.P

1. Geant4 v4.10 or newer must be installed with the following dependencies satisfied

• GDML (xcerces)
• OpenGL (optional, only needed to use openGL vizualisation)
• Inventor (optional, only needed to use the very convenient OpenInventor vizualisation)

Regarding possible problem with open Inventor on lxplus, see : https://twiki.cern.ch/twiki/bin/view/CMSPublic/WorkBookFireworksHowToFix#Indirect_remote_rendering_disabl

2. ROOT 6.04 or newer . A basic setup with xml parser is enough.

Make sure you loaded your Geant4 and ROOT setups (check $G4LIB and $ROOTSYS vars for instance). For user installing allpix on lxplus with SLC6, a GEANT4 installation has been prepared for your convenience. The bash script setup_allpix_lxplus_geant4.10.3.1.sh may need however to be edited. In the file, change the folder assigned to G4WORKDIR to a folder where you have write access, objects and executable produced during allpix compilation will be put in there. Ex :

    export G4WORKDIR=~/myG4WorkDirectory	

The default is $HOME/Allpix/allpix-install, according to the following instructions.

Allpix is now compilable using Cmake. We suggest the following work folder structure.

|--- AllpixMotherFolder /  				# Mother folder containing source, build and install folder
	 |----- allpix 			# Source code folder to be checked out from Github 
	 |      |----- src 
	 |      |----- include
	 |      |----- models
	 |      |----- share
	 |      |----- macros 	 
	 |----- allpix-build 	# Build folder for cmake 
	 |----- allpix-install # Installation folder for cmake 
	 |		|----- bin		# allpix executable folder

First create the mother Allpix folder :

	mkdir AllpixMotherFolder 
	cd AllpixMotherFolder

Then checkout the github version of allpix : git clone https://github.com/ALLPix/allpix.git

If running on lxplus, source the bash setup script (make sure you are using bash, if not, type exec bash) to get access the the precompiled geant4, root and other dependencies. (!!!!WARNING!!! lxplus path for installation has changed so make sure you have the latest version from github) :

source allpix/setup_allpix_geant4.10.3.1.sh

Now create the build and install folder :

mkdir allpix-build allpix-install
cd allpix-build 

Initialize cmake for compilation of allpix :

cmake ../allpix -DCMAKE_INSTALL_PREFIX=$G4WORKDIR	

if You wish to compile with the LCIO file writer option, use the following on LXPLUS :

	cmake ../allpix -DCMAKE_INSTALL_PREFIX=$G4WORKDIR -Dlcio=ON	

Please not that for a custom installation, the environnement variable LCIO should be set and poiting to your installation of LCIO.

Once the Cmake environnement is set, to compile, simply execute :

make -jX install 

X is a number of processor

If you follow the structure below, the allpix executable should be added to the PATH by the lxplus setup script. However, for custom installation, make sure allpix-install/bin is added to the PATH environnement variable using this command, you may want to add this command to your setup script :

export PATH=$PATH:PATHTOALLPIXINSTALLBINFOLDER

NOTE : the pixeldetector.xml file that is used for simulation is picked following a relative path to the allpix execution folder. So execute allpix executable from inside allpix folder, as before NOTE : The makefile method is deprecated for this version, please use CMAKE instead

the code on github follow this folder structure :

	 |----- allpix 			
	 |      |----- src 
	 |      |----- include
	 |      |----- models
	 |      |----- share
	 |      |----- macros 	

• include and src : These contain the source code of the allpix framework, whenever you create a new digitizer, the .cc and .h files will be added to these directories

• macros : This folder contains example of macro files to be used for different type of Simulation framework , see allpix Twiki page for more details : https://twiki.cern.ch/twiki/bin/view/Main/AllPix

• models : This folder contains the pixel geometry database (pixeldetector.xml). If one imports geometry from a gdml file, it should be put here. (ex : clicpix_box.gdml and clicpic_box_materials.xml)

• share : This directory contains files and scripts indirectly related to allpix, for example , the python script to translate allpix output to slcio file for processing in the EUTELESCOPE framework. See Twiki page for more details https://twiki.cern.ch/twiki/bin/view/Main/AllPix

See : https://twiki.cern.ch/twiki/bin/view/Main/AllPix

Setup your Geant4 and ROOT environments and run the following way, from the source folder

Interactive run: allpix macros/telescope1_vis.in

Batch run : allpix macros/telescope1.in batch

Tutorial on simulation of silicon pixel detectors with Allpix https://indico.desy.de/contributionDisplay.py?contribId=9&confId=16161

Measurement of the Lorentz angle in CMS pixel detector modules, by Paul Schuetze https://indico.desy.de/contributionDisplay.py?contribId=11&confId=16161

First use of the Allpix framework and preliminary results, by Andreas Heggelund https://indico.desy.de/getFile.py/access?contribId=56&sessionId=10&resId=0&materialId=slides&confId=16161

ALiBaVa Strip Sensor Analysis, by Thomas Eichhorn https://indico.desy.de/getFile.py/access?contribId=21&sessionId=8&resId=0&materialId=slides&confId=16161

Full simulation of the LUCID experiment in the Low Earth Orbit radiation environment by T. Whyntiea,b and M.A. Harrisona http:https://iopscience.iop.org/article/10.1088/1748-0221/10/03/C03043/meta

Calibration, simulation and test-beam characterisation of Timepix hybrid-pixel readout assemblies with ultra-thin sensors https://agenda.linearcollider.org/event/6000/contributions/27724/attachments/23014/35842/Samir_LCWS.pdf

Characterization of 3D Silicon Assemblies for ATLAS Pixel Upgrade, Thesis by Marcello Borri https://www.escholar.manchester.ac.uk/api/datastream?publicationPid=uk-ac-man-scw:198996&datastreamId=FULL-TEXT.PDF

CLIC Telescope Optimization with ALLPIX Simulation, by Wu Qi https://cds.cern.ch/record/2046145/files/CERN_WU_Qi.pdf

Recent results with HV-CMOS and planar sensors for the CLIC vertex detector, by Niloufar Alipour Tehrani https://indico.cern.ch/event/391665/contributions/1827195/attachments/1230571/1803598/VCI2016_NiloufarAlipourTehrani.pdf

The FE-I4 telescope for particle tracking in testbeam experiments, by M. Benoit et al. http:https://iopscience.iop.org/article/10.1088/1748-0221/11/07/P07003/meta