Minor stability improvements

Version 4.0.0 of the MIRACUM-Pipe including WES and tNGS. The TSO500 workflow covers the DNA and RNA parts of the panel.

Integration of a tumorOnly Pipeline;
Bugfixes in tNGS pipeline.

minor bugfix: error about missing R packages.
R version updated to 4.0.1 to avoid those errors.

• MIRACUM-Pipe extended to tNGS (tested with Illumina TruSight Tumor 170 panel)
• gnomAD database updated to gnomAD_genome v2.1.1
• UCSC SQL server is now used to annotate CNV regions per default
• Report extended and revised to include links to genome nexus and The Variant Interpretation for Cancer Consortium Meta-Knowledgebase
• stability improvments
• various bugfixes

Added the export of variants and copy number variants for subsequent import into cBioPortal.

Include maf file exporter for later import into cBioPortal.

Minor bugfixes.