😞

Liezl Maree roomrys

😞

Created October 8, 2024 15:52

SLEAP: Multiview Association via Pairs of Views and Fundamental Matrix

	"""This module implements cycle consistent matching using pairs of views."""

	from __future__ import annotations
	from typing import Generator

	import cv2
	import matplotlib.patches as patches
	import matplotlib.pyplot as plt
	import numpy as np
	import seaborn as sns

Created October 4, 2024 21:00

SLEAP: Get a summary CSV of all slp files in a directory

	"""Outline number of labeled frames, recording sessions, and video paths for all SLPs in directory.

	This script recursively finds SLP files in a directory and outputs a CSV outlining how many labeled frames, recording
	sessions, and videos there are in each slp project within a directory.
	"""


	import pathlib

	import pandas as pd

Created September 25, 2024 18:59

SLEAP-IO: Find timestamps for when an instances is in a ROI.

	"""Script to find when an annotation is in a ROI of a given image.

	# Installation
	```bash
	conda create -c conda-forge sleap-io shapely -n sio
	```

	# Usage
	Make changes to the __main__ block at the bottom of the file. Then activate the
	environment and run the script.

Last active September 25, 2024 18:57

SLEAP-IO: Auto-proofread with RFID (v0)

	import numpy as np
	import pandas as pd
	import shapely
	import sleap_io as sio

	from shapely import Polygon
	from sleap_io import Instance, Labels, LabeledFrame, PredictedInstance, Track

	def load_rfid_rois(ds_rfid: str):
	"""Load a dictionary of RFID ROI `Polygons`.

Last active September 20, 2024 21:41

SLEAP: Create a Labels project containing videos in a given directory

	"""This script creates a Labels object from a list of mp4 files in a directory."""

	from __future__ import annotations # Import future annotations

	from pathlib import Path

	from sleap import Labels, Video

	def find_videos_in_directory(directory: str, video_ext: str = None) -> list[str]:
	"""Find all video files in a directory.

Last active October 17, 2024 20:47

Export 3D poses from RecordingSessions within SLEAP.

	import h5py
	import logging
	import os

	import numpy as np
	from sleap_anipose import triangulate

	import sleap
	from sleap.io.cameras import RecordingSession, FrameGroup
	from sleap.gui.commands import TriangulateSession

Last active October 17, 2024 21:48

Use pygfx to plot 3D poses

	from __future__ import annotations

	import logging
	import os
	from datetime import datetime
	from pathlib import Path

	# TODO: Install these dependencies (and PySide6)
	import cv2
	import h5py

Created August 29, 2024 00:45

SLEAP: Assign `Track` based on a left/right threshold

	import sleap
	from sleap import Track
	from sleap.gui.app import main as sleap_label

	def main(ds: str, ds_output: str, midpoint:float = 0.5):
	"""Reassigns tracks based on x-threshold and saves to `ds_output`.

	Note: This function assumes that the dataset has only two animals. No restrictions
	are in place to ensure that two animals in the same frame are assigned different
	tracks. This is a simple example to demonstrate how to reassign tracks based on

Created August 27, 2024 21:32

SLEAP: Convert `dict` state to `tuple` state skeleton.json

	"""Converts the "py/state" entries in a JSON file to contain "py/tuple" entries.

	SLEAP uses jsonpickle to encode/decode `Skeleton` objects to/from JSON. When a Python
	object is encoded to JSON, the "py/state" key is used to store the object's state.
	jsonpickle relies on the object's `__getstate__` method to determine the state to store.
	attr creates a `__getstate__` method for the object. However, in `attr>=22.2.0`, the
	formatting changes s.t. `__getstate__` returns a dictionary of the object's attributes
	instead of a tuple. This causes problems when decoding the JSON back to a Python object
	if the system has an older version of `attr<22.2.0`.

Last active August 13, 2024 21:25

GCloud: Get Pricing Info of SKU

	import google.auth

	# TODO: pip install pandas
	import pandas as pd

	# TODO: pip install google-cloud-billing
	from google.cloud import billing_v1


	def list_services():