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We are an interdisciplinary ecology and environmental data science research group at the University of Florida combining Ethan White’s lab, which uses data science to understand ecological systems using large ecological and environmental datasets and Morgan Ernest’s lab, which studies how ecological systems change through time and runs long-term monitoring efforts in the Everglades and the Arizona desert. We do cutting edge research, collect and publish large open datasets, develop open source software, build websites, train scientists in computational tools, and generally try to make science a better, more efficient, more diverse and inclusive place.

You can also find us on:

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  1. DeepForest DeepForest Public

    Python Package for Airborne RGB machine learning

    Python 473 171

  2. PortalData PortalData Public

    Official Repo of the Portal Project Data

    R 45 30

  3. retriever retriever Public

    Quickly download, clean up, and install public datasets into a database management system

    Python 307 134

  4. portalr portalr Public

    A collection of functions to summarize the Portal Data

    R 11 13

  5. DeepTreeAttention DeepTreeAttention Public

    Implementation of Hang et al. 2020 "Hyperspectral Image Classification with Attention Aided CNNs" for tree species prediction

    Python 119 39

  6. portalcasting portalcasting Public

    Model development, deployment, and evaluation for forecasting Portal ecosystem dynamics

    R 8 10

Repositories

Showing 10 of 182 repositories
  • DeepForest Public

    Python Package for Airborne RGB machine learning

    weecology/DeepForest’s past year of commit activity
    Python 473 MIT 171 57 (3 issues need help) 6 Updated Aug 21, 2024
  • DoubleCounting Public

    A repo for visualizing airborne imagery, making a prediction with a deepforest model and remove double counting among overlapping images.

    weecology/DoubleCounting’s past year of commit activity
    Python 2 1 0 0 Updated Aug 21, 2024
  • weecology/portal-forecasts’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Aug 19, 2024
  • PortalData Public

    Official Repo of the Portal Project Data

    weecology/PortalData’s past year of commit activity
    R 45 30 6 1 Updated Aug 19, 2024
  • MillionTrees Public

    The MillionTreesBenchmark

    weecology/MillionTrees’s past year of commit activity
    Python 5 GPL-3.0 1 7 0 Updated Aug 14, 2024
  • website Public

    Lab website

    weecology/website’s past year of commit activity
    TeX 3 MIT 21 1 0 Updated Aug 11, 2024
  • wiki Public

    Weecology's Wiki - how to navigate life in the lab from choosing and pursuing a career path to using the printer

    weecology/wiki’s past year of commit activity
    HTML 1 4 6 1 Updated Aug 8, 2024
  • portalr Public

    A collection of functions to summarize the Portal Data

    weecology/portalr’s past year of commit activity
    R 11 13 8 0 Updated Aug 8, 2024
  • weecology/mvgamportal’s past year of commit activity
    R 2 1 9 0 Updated Aug 8, 2024
  • EvergladesWadingBird Public

    Data from the Everglades breeding bird monitoring project

    weecology/EvergladesWadingBird’s past year of commit activity
    R 3 CC0-1.0 3 10 1 Updated Aug 7, 2024

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