MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

Post-analysis of immune repertoire sequencing data

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

HLA-II ligand predictor.

T-cell motility simulator

A parser for immune receptor gene data, mainly IMGT references

Python SDK for Immune Epitope Database (IEDB) Analysis Tools API

Bayesian models used in CD56bright natural killer cells preferentially kill proliferating CD4+ T cells

This neural-network can predict the effector/memory T cell (T lymphocyte) subset of single cells based on flow cytometry data with 99,22% accuracy.

TCR Enrichment Analysis (TEA) Webtool