The codebase of the OpenMS project
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Updated
Aug 17, 2024 - C++
The codebase of the OpenMS project
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A Python API for the RCSB Protein Data Bank (PDB)
A collection of Galaxy-related training material
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Proteomics search & quantification so fast that it feels like magic
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Various teaching material
A modular, python-based framework for mass spectrometry. Powered by nbdev.
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
sensitive and precise assembly of short sequencing reads
Base Classes and Functions for Mass Spectrometry and Proteomics
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
Deep learning framework for proteomics
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
The Proteomics Experimental Design file format: Standard for experimental design annotation
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
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