🎄Visualization and annotation of phylogenetic trees

🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

REVOLVER - Repeated Evolution in Cancer

rtrees: an R package to assemble phylogenetic trees from mega-trees

Calculate distances between phylogenetic trees in R

Create, modify and analyse phylogenetic trees in R

🌳👨 An R package for manipulating phylogentic trees

The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package

Detection of outlier genes and species in phylogenomics

A simple treeviewer based on the R packages ape and phangorn.

Repository for the R nLTT package

Clone trees for Cancer Evolution studies from bulk sequencing data.

PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.

A workshop to learn reactive visualization

Script for detecting signals of introgression in large set of gene trees from unlinked markers

AstralPlane: R Package For Preparing, Running, Analyzing and Plotting from the Species Tree Program ASTRAL-III

COVID-19 mortality risk assessment among various age groups using phylogenomic analysis

App Shiny : Scalable visualization of groups within a hierarchical clustering from binary data matrix.

CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each sequence which can be used to calculate distances among sequences.

SpeciesTopoTestR: Likelihood-based hypothesis tests of species topologies in R