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pdb-structure

Here are 13 public repositories matching this topic...

HoShiMin / formatPE

A bunch of parsers for PE and PDB formats in C++

cpp pdb modern-cpp header-only pe pe-format portable-executable pe-file pe-analyzer pdb-files pdb-parser pdb-structure pe-applications pe-parser

Updated May 15, 2024
C++

Wang-Lin-boop / GetPDB

Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures) and save as "UniprotID-PDBID-ModelID-ChainID.pdb/cif".

julia uniprot pdb-structure pdb-chain

Updated Jul 24, 2024
Shell

wrf / pdbcolor

Python code to color a PDB structure based on parameters from a multiple sequence alignment

visualization evolution protein-structure protein pymol raxml phylobayes pdb-structure

Updated Aug 21, 2023
Python

johnnytam100 / pdb2uniprot

A Python script to map PDB ID + chain ID to UniProt ID.

bioinformatics mapping uniprot uniprot-ids bioinformatics-scripts uniprotkb pdb-files pdb-database bioinformatics-tool rcsb pdb-structure

Updated Mar 7, 2024
Python

mughal41 / Modeller_pdb_str

Generating PDB Structure Models via Modeller-Python

python modeller pdb-structure

Updated Nov 22, 2020
Python

Maximato / PDBan

Project for analysis of protein structures in .pdb file format. It calculates some structure parameters and can compare two structures by calculating the RMSD.

pdb rmsd pdb-structure gyration-radius

Updated Feb 16, 2021
Python

SharpDevOps10 / Protein-Visualization.Coursework

An application for illustrating the relative distances between protein structures.

visualization biology course-project coursework amino-acid-sequence pdb-structure

Updated Jun 10, 2023
JavaScript

Pawansit / StructureAnalyst

Get the Short Macromolecular level Summary for mmCIF file.

protein-structure pdb-structure

Updated May 17, 2024
Python

TayHuiYi / Bioinformatics-for-studying-S.-pneumoniae

Bioinformatics

dna-translation dna-extraction pdb-structure

Updated Apr 13, 2022
Jupyter Notebook

QDcvd / Tripeptide-single-amino-acid-database-generator

A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete

python protein pymol pdb-files modeller pdb-database pdb-structure

Updated May 18, 2021
Python

JureCerar / getpdb

Python script that retrives molecular structure data from online databases.

python pdb-structure

Updated Apr 2, 2024
Python

codecreatede / go-protein-analyzer

gorotuines for analyzing the protein for the deep learning

bioinformatics protein-structure protein-sequences pdb-files pdb-structure

Updated Oct 25, 2024
Go

jthornton-0 / cccp_modifier

Coiled-coil Crick Paramaterization PDB modifier for further design

bash pdb protein pdb-structure

Updated Sep 6, 2023
Shell

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