GenomeTools genome analysis system.

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Next generation sequencing reads de novo assembler.

An efficient index for the colored, compacted, de Bruijn graph

Evaluating genome assemblies

parallelized blat with multi-threads support

Machine-learning-based general bacterial promoter prediction tool.

A dotplot generator for large chromosomes

Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

A tool for compression and analysis of DNA sequences

map and call next generation genomic sequencing

blat with cluster parallel hybrid computing support

SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)

Quick Indexing Compresssed FASTA tool

bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.

SMIS: Single Molecular Integrative Scaffolding

The Peaks software GitHub repository