Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

A curated list of awesome computational cryo-EM methods.

register 3D point clouds using rotation, translation, and scale transformations.

Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.

TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.

The Swiss Army knife for carbohydrate structure validation, refinement and analysis

Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning

example set up for Relion on AWS ParallelCluster for CryoEM

A Docker-based distribution of Appion-Protomo.

.MRC and .EM thumbnailer for GNOME

volumetric image toolkit for simple feature detection (segment tomograms)

Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles

KLT picker: Particle picking using data-driven optimal templates (Python version)

A lightweight script to monitor RELION jobs and send information over Slack DMs

Plot the histogram of local resolution values of a cryo-EM reconstruction

helper scripts for Electron microscopy data processing

Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION

A Framework for Orientation Recovery with Uncertainty Measurement in Cryo-EM Image Analysis

Report the number of particles in each class from a run_data.star file produced by RELION