[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Biological sequences for the julia language

A Julia package to read, write and manipulate macromolecular structures

Parse and process FASTA and FASTQ formatted files of biological sequences.

Sequence alignment tools

Nucleic and amino acid primitive types

Parse and process SAM and BAM formatted files

Datastores for reads, not your papa's FASTQ files.

K-mer counting algorithms and count-data utilities for the BioJulia framework

The BioJulia package registry

Biological sequence variation

collection of miscellaneous command line bioinformatic scripts written in julia for speed

A small Julia package to represent BioSequences as a Voss matrix

Fast Inference of Biological Networks from Directed Regulations (Findr) in Julia

A comparison of Julia and Python on a simple task.

Representing BioSequences as Simplex numerical matrix

Count organic atoms in a BioSequence