R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

Software implementing published dragon king (DK) related statistical tools developed by the Erdi research group at the Center for Complex System Studies (CCSS) at Kalamazoo College.

R package to access USPTO bulk data in tidy, rectangular format

An R package for statistics and machine learning with persistence diagrams

A collection of awesome resources related to the yearly Advent of Code challenge.

Persistent homology to predict prognosis of lung cancer (CCF).

Tools for working with pedigrees in R

R package porting Ripser-based persistent homology calculation engines from C++ via Rcpp. Currently ports Ripser (Vietoris-Rips complex) and Cubical Ripser (cubical complex).

R package that provides complex systems datasets from the Colorado Index of Complex Networks (ICON) at https://icon.colorado.edu/.

Code supporting "Comparing R packages for calculation of persistent homology" manuscript

Python package to access USPTO bulk data in rectangular format

A Tiny Contribution Table Generator Based on ggplot2 https://shixiangwang.shinyapps.io/contribution

Advent of Code - 2020

uniform samplers from immersed manifolds

R package for computing the Mapper construction from Topological Data Analysis

R package for simplifying general computation on simplicial complexes

ggplot2 extension for alluvial plots

calculator of persistence pair for 4 dimensional voxel data

calculator of persistence pair for 3 dimensional voxel data

calculator of persistence pair for 2 dimensional pixel data

R package for gene signature quality control, available from CRAN

Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams

ggplot2 extension to visualize persistent homology

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

A list of awesome beginners-friendly projects.

A curated list of awesome R packages, frameworks and software.

(R package) Analyze High-Dimensional Data Using Discrete Morse Theory

Helping researchers to operationalize social determinants of health data.

projects