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44 Open 154 Closed
44 Open 154 Closed
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Issues list

PDBFixer - in some cases added residues have amides with non-trans OCNH stereochemistry bug
#307 opened Sep 30, 2024 by ivanicj
1
14
Weird coordinates and unable to add Hydrogens upon adding tyrosines
#304 opened Aug 20, 2024 by sukritsingh
5
Should PDBFixer write out SEQRES entries if provided in the input?
#293 opened Jun 6, 2024 by sukritsingh
9
The repair of two ends of peptide didn't return the desired result
#283 opened Dec 6, 2023 by bdx114514
PDBFixer cannot handle nucleic acids with residue name N
#281 opened Nov 14, 2023 by jamesmkrieger
5
Do we have method to mutate the iCode-containing residue? enhancement
#280 opened Oct 11, 2023 by locitran
2
pypi version
#254 opened Oct 21, 2022 by Pantelispanka
13
PDBs from RCSB failed to reconstruct
#219 opened Mar 30, 2021 by slawek111
7
Charges lost on ASP and GLU residues
#210 opened Oct 12, 2020 by tdudgeon
1
How to select a single position for atoms with multiple alternate positions listed enhancement
#205 opened Aug 13, 2020 by ghost
3
Residue number strange behavior
#201 opened Apr 16, 2020 by MauriceKarrenbrock
2
List of fixes for failing test cases
#199 opened Mar 5, 2020 by zhang-ivy
2
Wrong placement of added hydrogens. enhancement
#179 opened Oct 16, 2018 by niko97320
9
Non-reproducible behaviour of addMissingAtoms
#176 opened Oct 3, 2018 by JoaoRodrigues
pdbfixer is mislabeling built residues with negative res IDs
#175 opened Oct 3, 2018 by nitroamos
5
More rigorous implementation of findMissingResidues needed (e.g., doesn't work for antibodies)
#170 opened Jun 4, 2018 by nitroamos
13
Add Zenodo DOI?
#166 opened May 6, 2018 by jchodera
Exception: Particle coordinate is nan in addMembrane
#163 opened Apr 17, 2018 by nitroamos
6
Getting version? bug
#146 opened Jan 24, 2017 by davidlmobley
4
N-terminal residue added with wrong chirality and/or a cis-peptide bond
#145 opened Jan 10, 2017 by rafwiewiora
29
addMissingHydrogens() fails under Windows
#142 opened Nov 1, 2016 by jepdavidson
3
findMissingResidues() does not work on files that have been through pdbfixer already
#138 opened Jul 20, 2016 by rafwiewiora
2
Citing pdbfixer
#137 opened Jul 20, 2016 by jchodera
2
Enable nightly builds
#129 opened Apr 10, 2016 by jchodera
2
Add option to remove crystallographic waters but keep heterogens
#126 opened Mar 26, 2016 by jchodera
ProTip! no:milestone will show everything without a milestone.