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Web accessible Zotero inside a Debian Container

Dockerfile 53 1 Updated Oct 30, 2024

A Matrix collaboration client for Android.

Kotlin 3,377 723 Updated Oct 31, 2024

A glossy Matrix collaboration client for desktop.

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A Slurm cluster using docker-compose

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Run cBioPortal using Docker Compose

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Regular expression library for mruby, PCRE version.

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mrbgem of 鬼雲's Regular Expression

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Oxford Nanopore's Basecaller

C++ 522 62 Updated Oct 23, 2024

Convert PDF to markdown quickly with high accuracy

Python 17,428 1,000 Updated Oct 31, 2024

Pod5: a high performance file format for nanopore reads.

C++ 137 18 Updated Aug 9, 2024

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

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DuckDB is an analytical in-process SQL database management system

C++ 23,918 1,900 Updated Nov 2, 2024

Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.

Nextflow 72 16 Updated Oct 11, 2024

Fast, Effective, Simple Web Framework

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Array type that can hold more than 2**32-1 elements

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A modern alternative to ls

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User-friendly GUI macOS application for Homebrew Casks

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implicit pangenome graph

Rust 41 5 Updated Nov 1, 2024

A drop-in replacement for dplyr, powered by DuckDB for performance.

R 277 18 Updated Nov 2, 2024

expressions on VCFs

Rust 40 Updated Oct 8, 2024

Ruby binding for DuckDB

Ruby 156 24 Updated Nov 1, 2024

Repository containing required policies for Nextflow Tower deployment on AWS

7 7 Updated Jul 8, 2024

A utility script to manage local docker instances of HiGlass

Python 23 9 Updated Jul 6, 2023

A Command line tool that generate `LICENSE` file.

Rust 143 20 Updated Sep 6, 2024

GitHub Action for creating GitHub Releases based on changelog.

Shell 72 11 Updated Oct 20, 2024

A utility to create GrandPerspective scan files on other operating systems

Go 8 1 Updated Sep 6, 2023

Lightweight mosaic/somatic SV caller for long reads (WIP)

JavaScript 27 3 Updated Jun 12, 2024

Terraform modules of AWS Batch for serverless computing

HCL 1 Updated Oct 29, 2024
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