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Popular repositories

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 619 364

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 289 74

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 275 71

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 248 146

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 139 87

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 107 18

Repositories

Showing 10 of 174 repositories
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 619 GPL-2.0 364 60 (1 issue needs help) 7 Updated Aug 21, 2024
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 21, 2024
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 275 71 48 (3 issues need help) 13 Updated Aug 20, 2024
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    flatironinstitute/alphafold’s past year of commit activity
    Python 0 Apache-2.0 2,193 0 0 Updated Aug 20, 2024
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 3 Apache-2.0 1 16 2 Updated Aug 20, 2024
  • inferelator-velocity Public

    Calculate dynamic (time-dependent) latent parameters from single-cell expression data

    flatironinstitute/inferelator-velocity’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 20, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 42 Apache-2.0 5 51 1 Updated Aug 20, 2024
  • MutantAutoMate Public
    flatironinstitute/MutantAutoMate’s past year of commit activity
    Python 0 0 4 2 Updated Aug 20, 2024
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 4 MIT 0 17 2 Updated Aug 20, 2024
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 21 Apache-2.0 1 1 0 Updated Aug 19, 2024
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