An nf-test plugin for reading the contents of SAM/BAM/CRAM files in assertions

a scalable data profiler

A method to locate variation clusters

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as t…

Visually simulate Git operations in your own repos with a single terminal command.

Provides persistent function result caching with support for complex data types, including classes and dataclasses.

Fuzzy String Matching in Python

Structural variant discovery and genotyping from mapped PacBio HiFi data

Complex structural variant visualization for HiFi sequencing data

STITCH - Sequencing To Imputation Through Constructing Haplotypes

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Hydra is a framework for elegantly configuring complex applications

Buckaroo - the data wrangling assistant for pandas. Quickly explore dataframes, and run pandas commands via a GUI. Works inside the jupyter notebook.

Public repository for VariantValidator project

ORM and toolkit to help keep your Benchling schemas and downstream dependencies in sync.

A highly customizable homepage (or startpage / application dashboard) with Docker and service API integrations.

Clustering analysis for CeVICA, a cell-free nanobody engineering platform

Simple PDF generation for Python

A package to determine the values of generic classes through instances or subclasses

Fast sequencing data quality metrics

nf-test plugin to provide support for VCF files.

Phased assembly variant caller

A comprehensive toolkit for mutational signature analysis

A fast approximate aligner for long DNA sequences

expressions on VCFs

An ATACseq Nextflow Workflow

mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

JSON diff and patch

A comprehensive repository of reasoning tasks for Medical LLMs (and beyond)