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Pull requests: YuLab-SMU/treeio

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Pull requests list

Speed up read.beast and multithreading and progress logging
#128 by brj1 was merged Oct 27, 2024 Loading…
1
Update CITATION
#123 by Clearmind777 was merged Jan 10, 2024 Loading…
speed up read.beast
#118 by SimonGreenhill was merged Dec 13, 2023 Loading…
2
make write.jtree more efficient and less noisy
#117 by SimonGreenhill was merged Dec 13, 2023 Loading…
fix test warnings
#116 by SimonGreenhill was merged Dec 13, 2023 Loading…
2
add write.jplace
#115 by xiangpin was merged Nov 27, 2023 Loading…
added support for multiple trees / writing phylo objects in write.beast
#113 by brj1 was merged Apr 8, 2024 Loading…
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reexport as.phylo.hclust_node
#110 by xiangpin was merged Aug 25, 2023 Loading…
use check_installed to check whether the suggest pkgs is installed
#107 by xiangpin was merged Aug 3, 2023 Loading…
1
fix issue when beast file contain negative branch
#106 by xiangpin was merged Aug 2, 2023 Loading…
1
update spt and as.phylo.igraph consider edge attributes and add find.hclust.igraph
#105 by xiangpin was merged Aug 11, 2023 Loading…
2
Functions.migrate
#104 by xiangpin was merged Aug 11, 2023 Loading…
suppress the warning message about check whether is a tbl_tree
#103 by xiangpin was merged Jul 24, 2023 Loading…
add find.spt funtion
#102 by xiangpin was merged Jul 14, 2023 Loading…
fix a bug of as.treedata for tbl_df
#101 by xiangpin was merged Jul 14, 2023 Loading…
Keep.tip
#100 by xiangpin was merged Jul 13, 2023 Loading…
convert igraph to phylo
#99 by xiangpin was merged Jul 12, 2023 Loading…
fix a bug in read.nhx when the string of metadata contains the character and numeric simultaneously
#97 by xiangpin was merged May 31, 2023 Loading…
supporting dendro class to phylo class
#95 by xiangpin was merged Mar 2, 2023 Loading…
add Inner_join method
#93 by xiangpin was merged Mar 2, 2023 Loading…
update full_join method
#92 by xiangpin was merged Mar 2, 2023 Loading…
update as.phylo and as.treedata method for data.frame class
#88 by xiangpin was merged Oct 30, 2022 Loading…
add as.phylo for list
#86 by xiangpin was merged Sep 16, 2022 Loading…
2
To better support the visualization of pvclust class using ggtree
#84 by xiangpin was merged Aug 19, 2022 Loading…
Add filter method to get.placement.jplace
#83 by mjchen1996 was closed Aug 19, 2022 Loading…
ProTip! Updated in the last three days: updated:>2024-10-29.