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@HKU-BAL

HKUCS Bioinformatics Algorithms and Core Technology Research Laboratory

Research group led by Ruibang Luo in Computer Science, The University of Hong Kong

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  1. Clair3 Clair3 Public

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    Python 244 26

  2. ClairS ClairS Public

    ClairS - a deep-learning method for long-read somatic small variant calling

    Python 72 7

  3. ClairS-TO ClairS-TO Public

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

    Python 49 3

Repositories

Showing 10 of 31 repositories
  • Clair3-Nova Public

    de novo variant calling in trio using Nanopore long-reads

    HKU-BAL/Clair3-Nova’s past year of commit activity
    Python 8 BSD-3-Clause 0 0 0 Updated Nov 1, 2024
  • AutoPM3 Public
    HKU-BAL/AutoPM3’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 30, 2024
  • ClairS Public

    ClairS - a deep-learning method for long-read somatic small variant calling

    HKU-BAL/ClairS’s past year of commit activity
    Python 72 BSD-3-Clause 7 2 0 Updated Oct 12, 2024
  • ClairS-TO Public

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

    HKU-BAL/ClairS-TO’s past year of commit activity
    Python 49 BSD-3-Clause 3 3 0 Updated Oct 11, 2024
  • Clair3-RNA Public

    Clair3-RNA - a long-read small variant caller for RNA sequencing data

    HKU-BAL/Clair3-RNA’s past year of commit activity
    Python 14 BSD-3-Clause 0 3 0 Updated Oct 8, 2024
  • Clair3 Public

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    HKU-BAL/Clair3’s past year of commit activity
    Python 244 26 8 0 Updated Jul 29, 2024
  • msdb-flask Public

    Mirtronstructdb: A comprehensive database of mirtrons with predicted secondary structures

    HKU-BAL/msdb-flask’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jul 28, 2024
  • CellContrast Public

    CellContrast: Reconstructing Spatial Relationships in Single-Cell RNA Sequencing Data via Deep Contrastive Learning

    HKU-BAL/CellContrast’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Jul 18, 2024
  • Clair3-Trio Public archive

    Clair3-Trio: variant calling in trio using Nanopore long-reads

    HKU-BAL/Clair3-Trio’s past year of commit activity
    Python 14 BSD-3-Clause 1 2 0 Updated Apr 18, 2024
  • ClusterV-Web Public
    HKU-BAL/ClusterV-Web’s past year of commit activity
    C 3 BSD-3-Clause 0 0 0 Updated Dec 27, 2023
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