Pandas ExtensionDtypes for dealing with genomics data
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Updated
Feb 18, 2023 - Python
Pandas ExtensionDtypes for dealing with genomics data
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
🧬 gnomAD Python API is used to obtain data from gnomAD (genome aggregation database).
Genomic Data Commons API wrapper
STARVar:Symptom based Tool for Automatic Ranking of Variants using evidence from literature and genomes
A python library to develop genomic data simulators
simON-reads ("Simulate Oxford Nanopore Reads") is a simple yet powerful tool to generate fastq files containing MiniON-like long reads
Manifestation of the Lottery Ticket Phenomena in supervised, reinforcement and unsupervised learning.
Python tool built for a user-friendly interface for searching individual variants, batch queries, and exploring gene regions from the Ensembl database.
odd ratios estimator and likelihood of occurrence in geographical location
Jupyter notebook generator to download and execute the processing files for GGR related datasets
Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget
Python code for the processing of the input data for SDA tensor and matrix decomposition and the resulting output data.
This repository contains the file codes used to complete the final project for the course Post Genomic Analysis.
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