🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
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Updated
Nov 12, 2020 - Shell
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Scripts to import your FeatureCounts output into DEXSeq
scripts for RNA-Seq analysis
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
A tool for extraction of lexical features from text based on UIMA and MapReduce
This repository contatins a pipeline for RNA-Seq data processing using featurecounts for gene count generation
Scripts to index and align Bovine genome with HISAT2
nextflow ATACseq pipeline for GG02
Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.
Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R
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