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cibersortx

Here are 3 public repositories matching this topic...

kiteomoru / Deconvolution-analysis-of-Mouse-Liver-Cell-Types

This project involves the Deconvolution (Digital flow-cytometry) of mice whole liver. ScRNA-Seq analysis was performed using Seurat R package, RNA-Seq pipeline was performed with HISAT2 (Alignment), HTSEQ (read count). Data normalization was performed, and the data was uploaded to CIBERSORTx to perform deconvolution analysis to identify the diff…

rna-seq r scrna-seq seurat cibersortx

Updated Aug 1, 2022
R

kalidouBA / DICEPRO

Semi-Supervise cellular deconvolution of Bulk RnaSeq using NMF and CiberSortx, DCQ or others

machine-learning r neural-network iterative-methods rna-seq-analysis deconvolution abundance-estimation dcq nmf-matrix-factorization cibersortx

Updated Jul 16, 2024
R

Harithaa-Anandakumar / masters.github.io

My master thesis is hosted here !

rna-seq-analysis cibersortx cardiomyocytes

Updated Dec 19, 2020
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