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@pepkit

Portable Encapsulated Projects

Standardized sample metadata structure for biological research

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  1. peppy peppy Public

    Project metadata manager for PEPs in Python

    Python 37 12

  2. looper looper Public

    A job submitter for Portable Encapsulated Projects

    Python 20 7

  3. geofetch geofetch Public

    Builds a PEP from SRA or GEO accessions

    Python 42 5

  4. pepr pepr Public

    Project metadata manager for PEPs in R

    R 4 1

  5. pepspec pepspec Public

    Documentation for PEP specification and all PEPkit software

    HTML 10 4

  6. pephub pephub Public

    A web API and database for biological sample metadata

    TypeScript 12 2

Repositories

Showing 10 of 43 repositories
  • pipestat Public

    Pipeline results reporting package

    pepkit/pipestat’s past year of commit activity
    Python 4 BSD-2-Clause 2 10 2 Updated Jul 15, 2024
  • pephub Public

    A web API and database for biological sample metadata

    pepkit/pephub’s past year of commit activity
    TypeScript 12 BSD-2-Clause 2 61 (1 issue needs help) 0 Updated Jul 15, 2024
  • peppy Public

    Project metadata manager for PEPs in Python

    pepkit/peppy’s past year of commit activity
    Python 37 BSD-2-Clause 12 34 (1 issue needs help) 2 Updated Jul 15, 2024
  • pepdbagent Public

    Database for storing sample metadata

    pepkit/pepdbagent’s past year of commit activity
    Python 2 BSD-2-Clause 1 8 (1 issue needs help) 2 Updated Jul 11, 2024
  • pepspec Public

    Documentation for PEP specification and all PEPkit software

    pepkit/pepspec’s past year of commit activity
    HTML 10 4 4 1 Updated Jul 9, 2024
  • looper Public

    A job submitter for Portable Encapsulated Projects

    pepkit/looper’s past year of commit activity
    Python 20 BSD-2-Clause 7 9 2 Updated Jul 8, 2024
  • geopephub Public

    Automatic uploader of GEO metadata to PEPhub.

    pepkit/geopephub’s past year of commit activity
    Python 0 BSD-2-Clause 0 4 (1 issue needs help) 0 Updated Jul 2, 2024
  • hello_looper Public

    A Hello World! example repository for looper

    pepkit/hello_looper’s past year of commit activity
    Python 0 5 2 0 Updated Jun 27, 2024
  • pepr Public

    Project metadata manager for PEPs in R

    pepkit/pepr’s past year of commit activity
    R 4 1 2 1 Updated Jun 25, 2024
  • ubiquerg Public

    Tools for work (erg) everywhere (ubique)

    pepkit/ubiquerg’s past year of commit activity
    Python 0 BSD-2-Clause 3 1 0 Updated Jun 19, 2024
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