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The repository for codes developed to generated the Maize NC358 assemblies and analyses.

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oushujun/Maize_NC358

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This is the repository to store codes and commands for the maize NC358 assembly and analyses. Please refer to different folders for different steps of the analyses, including:

  1. Read depth downsampling and read length shifting
  2. Genome Assembly
  3. Gap fixing
  4. Polishing
  5. Super-scaffolding
  6. Generation of pseudomolecules
  7. Gene annotation
  8. LTR_analysis
  9. Assessing component assemblies
  10. Figure plotting

Scripts in this repository are licensed under General Public License v3.

For information inquiry please email R. Kelly Dawe ([email protected]), Candice N. Hirsch ([email protected]), Matthew B. Hufford ([email protected]), or Doreen Ware ([email protected]).

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The repository for codes developed to generated the Maize NC358 assemblies and analyses.

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