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v1.2.0

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MINOR: Update version for JOSS release

- Update version to 1.2.0 for JOSS release
- Hide paper folder from main branch

v1.1.0

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Merge pull request #5 from ossmith/dev-1.1

MINOR: fix output stem defaults

v1.0.0

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minor: update installation instructions

Add comment about updating perl module in the conda environment if there is an incompatibility.