latchbio-nfcore
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ampliseq
ampliseq PublicForked from nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Nextflow 1
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fetchngs
fetchngs PublicForked from nf-core/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
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sarek
sarek PublicForked from nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow
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chipseq
chipseq PublicForked from nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
Nextflow
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scrnaseq
scrnaseq PublicForked from nf-core/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
Nextflow
Repositories
- cutandrun Public Forked from nf-core/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
latchbio-nfcore/cutandrun’s past year of commit activity - spatialvi Public Forked from nf-core/spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
latchbio-nfcore/spatialvi’s past year of commit activity - chipseq Public Forked from nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
latchbio-nfcore/chipseq’s past year of commit activity - sarek Public Forked from nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
latchbio-nfcore/sarek’s past year of commit activity - rnaseq Public Forked from nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
latchbio-nfcore/rnaseq’s past year of commit activity
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