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@evolbioinfo

Evolutionary Bioinformatics

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  1. gotree gotree Public

    Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

    Go 118 15

  2. goalign goalign Public

    Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

    Go 66 8

  3. booster booster Public

    C 27 2

  4. pastml pastml Public

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    Python 29 6

  5. dockerfiles dockerfiles Public

    Dockerfiles for tools commonly used for phylogenetic analyses

    Dockerfile 8 9

  6. phylodeep phylodeep Public

    PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

    Python 19 5

Repositories

Showing 10 of 29 repositories
  • phylodeep Public

    PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

    evolbioinfo/phylodeep’s past year of commit activity
    Python 19 5 1 1 Updated Aug 14, 2024
  • geo_subsampler Public

    A phylogeny subsampling tool combining geographic proportions and phylogenetic diversity

    evolbioinfo/geo_subsampler’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 10, 2024
  • pastml Public

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    evolbioinfo/pastml’s past year of commit activity
    Python 29 GPL-3.0 6 9 0 Updated Aug 8, 2024
  • bdei Public

    Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees

    evolbioinfo/bdei’s past year of commit activity
    Python 2 LGPL-2.1 0 0 0 Updated Aug 7, 2024
  • phylodeep_data_bdss Public

    Data needed for CI computation with Birth-Death model with superspreading (BDSS) in [PhyloDeep](https://github.com/evolbioinfo/phylodeep)

    evolbioinfo/phylodeep_data_bdss’s past year of commit activity
    Python 0 0 0 0 Updated Aug 6, 2024
  • dockerfiles Public

    Dockerfiles for tools commonly used for phylogenetic analyses

    evolbioinfo/dockerfiles’s past year of commit activity
    Dockerfile 8 9 0 0 Updated Aug 5, 2024
  • phylodeep_data_bdei Public

    Data needed for CI computation with Birth-Death Exposed-Infectious (BDEI) model in [PhyloDeep](https://github.com/evolbioinfo/phylodeep).

    evolbioinfo/phylodeep_data_bdei’s past year of commit activity
    Python 0 0 0 0 Updated Aug 1, 2024
  • phylodeep_data_bd Public

    Data needed for CI computation with Birth-Death (BDEI) model in [PhyloDeep](https://github.com/evolbioinfo/phylodeep).

    evolbioinfo/phylodeep_data_bd’s past year of commit activity
    Python 0 0 0 0 Updated Aug 1, 2024
  • gotree Public

    Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

    evolbioinfo/gotree’s past year of commit activity
    Go 118 GPL-2.0 15 6 0 Updated Jul 4, 2024
  • treesimulator Public
    evolbioinfo/treesimulator’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Jul 1, 2024
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