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  1. EVcouplings EVcouplings Public

    Evolutionary couplings from protein and RNA sequence alignments

    Jupyter Notebook 225 74

  2. EVzoom EVzoom Public

    Visually explore covariation in protein families

    JavaScript 36 5

  3. plmc plmc Public

    Inference of couplings in proteins and RNAs from sequence variation

    C 98 36

  4. EVmutation EVmutation Public

    Mutation effects predicted from sequence co-variation

    HTML 58 12

  5. EVE EVE Public

    Forked from OATML/EVE

    Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning"

    Python 8 2

  6. EVEscape EVEscape Public

    Forked from OATML-Markslab/EVEscape

    Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

    Python 1

Repositories

Showing 10 of 25 repositories
  • EVcouplings Public

    Evolutionary couplings from protein and RNA sequence alignments

    debbiemarkslab/EVcouplings’s past year of commit activity
    Jupyter Notebook 225 74 59 (2 issues need help) 4 Updated Jul 23, 2024
  • popEVE Public
    debbiemarkslab/popEVE’s past year of commit activity
    Python 10 GPL-3.0 3 0 0 Updated Jul 2, 2024
  • EVEscape Public Forked from OATML-Markslab/EVEscape

    Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

    debbiemarkslab/EVEscape’s past year of commit activity
    Python 1 MIT 8 0 1 Updated Mar 5, 2024
  • debbiemarkslab/Vax_design’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 5, 2024
  • SeqDesign Public

    Protein design and variant prediction using autoregressive generative models

    debbiemarkslab/SeqDesign’s past year of commit activity
    Python 85 MIT 20 2 0 Updated Jan 23, 2024
  • nanobody-polyreactivity Public

    Polyreactivity Website

    debbiemarkslab/nanobody-polyreactivity’s past year of commit activity
    Python 9 MIT 4 1 0 Updated Jun 26, 2023
  • BEAR Public

    This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"

    debbiemarkslab/BEAR’s past year of commit activity
    Python 12 MIT 3 1 0 Updated Jun 7, 2023
  • debbiemarkslab/ZIP_benchmark’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 1, 2023
  • plmc Public

    Inference of couplings in proteins and RNAs from sequence variation

    debbiemarkslab/plmc’s past year of commit activity
    C 98 MIT 36 7 2 Updated Jan 21, 2023
  • detectDesign Public

    toolkit for finding likely cas9 off-target binding and effect on gene expression, designing sgRNAs and pairs of sgRNAs with minimal off-target effect on gene-expression

    debbiemarkslab/detectDesign’s past year of commit activity
    Jupyter Notebook 7 2 0 1 Updated Jun 22, 2022

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