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@certe-medical-epidemiology

Certe Medical Epidemiology

Repo collection of the non-profit organisation Certe, Department of Medical Epidemiology. Here to support open science.

For the old certetools, see here (private repo): https://github.com/certe-medical-epidemiology/certetools

These are R packages developed by Certe, a non-profit organisation for integrated medical diagnostics and advice for primary and secondary healthcare. Certe provides high-quality medical diagnostics and related products and services for healthcare providers and their patients. Hospitals, (general) practitioners, midwives and thus hundreds of thousands of people have relied on Certe's care for many years.

Their department of Medical Epidemiology, which developed these R packages, conducts (and develops new methods for) medical data analyses, for both routine workflows and scientific research. Our R packages are not on CRAN since their use is primarily intended for own staff, but they are publicly available to support open science. All our R packages are free to use and licensed under the GNU General Public License v2.0 (GPL-2).

Install

All our R packages are published here at R-universe, allowing anyone to install and update the packages using common methods, such as the RStudio menu bar or install.packages(). To add the Certe Medical Epidemiology R-universe to your existing repositories, run:

options(repos = c(
  CerteMedEpi = "https://certe-medical-epidemiology.r-universe.dev",
  options()$repos)

You can now install any Certe R package, e.g.:

# our 'loader package' certedata installs all Certe R packages this way:
install.packages("certedata", dependencies = TRUE)

# or install a specific package:
install.packages("certegis")
install.packages("certeplot2")
install.packages("certestats")

Pinned Loading

  1. certedata certedata Public

    Package loader for all Certe Medical Epidemiology R packages. This package will install all Certe R packages.

    R

  2. certeplot2 certeplot2 Public

    R Package for fast and convenient plotting, by providing wrappers around 'tidyverse' packages such as 'ggplot2', while also providing plotting in the Certe organisational style

    R 3

  3. certemail certemail Public

    R package for working remotely with emails, using Microsoft 365

    R

  4. certeprojects certeprojects Public

    R Package with functions to automate department projects using MS Teams, MS Planner, Shiny, R Markdown and Quarto

    R 2 1

  5. certestyle certestyle Public

    R package for applying Certe styles and other formatting tools

    R

  6. certestats certestats Public

    R package for applying statistical modelling, such as creating machine learning models

    R

Repositories

Showing 10 of 13 repositories
  • certe-medical-epidemiology/certe-medical-epidemiology.r-universe.dev’s past year of commit activity
    0 0 0 0 Updated Aug 12, 2024
  • certeplot2 Public

    R Package for fast and convenient plotting, by providing wrappers around 'tidyverse' packages such as 'ggplot2', while also providing plotting in the Certe organisational style

    certe-medical-epidemiology/certeplot2’s past year of commit activity
    R 3 GPL-2.0 0 0 0 Updated Aug 10, 2024
  • certetoolbox Public

    R package with miscellaneous functions that do not fit a dedicated package

    certe-medical-epidemiology/certetoolbox’s past year of commit activity
    R 0 GPL-2.0 0 1 2 Updated Jul 31, 2024
  • certemail Public

    R package for working remotely with emails, using Microsoft 365

    certe-medical-epidemiology/certemail’s past year of commit activity
    R 0 GPL-2.0 0 1 0 Updated Jul 10, 2024
  • certestyle Public

    R package for applying Certe styles and other formatting tools

    certe-medical-epidemiology/certestyle’s past year of commit activity
    R 0 GPL-2.0 0 0 0 Updated Jul 8, 2024
  • certedb Public

    R package for database connections

    certe-medical-epidemiology/certedb’s past year of commit activity
    R 0 GPL-2.0 1 0 0 Updated Jul 1, 2024
  • template Public template

    Template repo of Certe Medical Epidemiology for future new repos

    certe-medical-epidemiology/template’s past year of commit activity
    R 0 GPL-2.0 0 0 0 Updated Jun 23, 2024
  • certeprojects Public

    R Package with functions to automate department projects using MS Teams, MS Planner, Shiny, R Markdown and Quarto

    certe-medical-epidemiology/certeprojects’s past year of commit activity
    R 2 GPL-2.0 1 0 1 Updated May 9, 2024
  • certestats Public

    R package for applying statistical modelling, such as creating machine learning models

    certe-medical-epidemiology/certestats’s past year of commit activity
    R 0 GPL-2.0 0 1 0 Updated May 9, 2024
  • certeapi Public

    R package for Providing an Application Programming Interface

    certe-medical-epidemiology/certeapi’s past year of commit activity
    R 0 GPL-2.0 0 0 0 Updated Apr 18, 2024

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