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  1. marker_gene_phylogeny marker_gene_phylogeny Public

    Runs phylosift to generate a marker gene phylogeny, useful for intra-genus comparisons.

    Python 1

  2. asqcan asqcan Public

    Pipeline for bacterial genome assembly, quality control and annotation

    Python 4 1

  3. snpiphy snpiphy Public

    An automated snp phylogeny pipeline

    Python 2 2

  4. virseaqc virseaqc Public

    virseaqc - A combined pipeline for VIRal genome SEarching, Assembly, and Quality Control on Ion-Torrent instruments.

    Python 1 1