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ATGU

Analytic and Translational Genetics Unit

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  1. ukbb_pan_ancestry ukbb_pan_ancestry Public

    Analyses conducting GWAS across the UKBB diverse superpopulations

    Python 45 23

  2. hgdp_tgp hgdp_tgp Public

    Jupyter Notebook 32 5

  3. GWASpy GWASpy Public

    GWAS QC, PCA, haplotype phasing, genotype imputation

    Python 16 4

  4. gnomad_nc_constraint gnomad_nc_constraint Public

    Python 6 2

  5. CHARR CHARR Public

    Contamination from Homozygous Alternate Reference Reads

    Python 6 2

  6. cromwell_google_setup cromwell_google_setup Public

    Notes for setting up a cromwell server for google cloud

    5

Repositories

Showing 10 of 17 repositories
  • GWASpy Public

    GWAS QC, PCA, haplotype phasing, genotype imputation

    atgu/GWASpy’s past year of commit activity
    Python 16 MIT 4 0 0 Updated Sep 17, 2024
  • bge_analysis Public
    atgu/bge_analysis’s past year of commit activity
    Jupyter Notebook 1 2 0 0 Updated Sep 16, 2024
  • gnomaf Public
    atgu/gnomaf’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 31, 2024
  • hb_pipelines Public
    atgu/hb_pipelines’s past year of commit activity
    Python 0 0 0 0 Updated Jul 25, 2024
  • hgdp_tgp Public
    atgu/hgdp_tgp’s past year of commit activity
    Jupyter Notebook 32 MIT 5 2 0 Updated Jul 15, 2024
  • ukbb_pan_ancestry Public

    Analyses conducting GWAS across the UKBB diverse superpopulations

    atgu/ukbb_pan_ancestry’s past year of commit activity
    Python 45 MIT 23 12 27 Updated Jun 26, 2024
  • aou_gwas Public
    atgu/aou_gwas’s past year of commit activity
    Python 3 0 1 0 Updated May 30, 2024
  • gnomad_nc_constraint Public
    atgu/gnomad_nc_constraint’s past year of commit activity
    Python 6 2 2 0 Updated Dec 28, 2023
  • CHARR Public

    Contamination from Homozygous Alternate Reference Reads

    atgu/CHARR’s past year of commit activity
    Python 6 2 1 1 Updated Oct 31, 2023
  • ukbb_exomes_pleiotropy Public
    atgu/ukbb_exomes_pleiotropy’s past year of commit activity
    R 1 0 0 0 Updated May 8, 2023
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