Created some rmarkdown examples

asancpt · Aug 2, 2017 · 7bf12f9 · 7bf12f9
1 parent 85052e1
commit 7bf12f9
Show file tree

Hide file tree

Showing 23 changed files with 386 additions and 0 deletions.
diff --git a/2017-subintern.Rmd b/2017-subintern.Rmd
@@ -0,0 +1,84 @@
+---
+title: "How to use R markdown"
+author: "AMC Subintern"
+date: "2017-08-02"
+bibliography: "references/myref.bib"
+output: 
+ html_document:
+ toc: yes
+---
+
+# Introduction
+
+이것은 R 마크다운입니다.
+
+```{r}
+# install.packages('tidyverse')
+library(tidyverse)
+```
+
+# Materials and Methods
+
+Theoph의 앞부분입니다.
+
+```{r}
+head(Theoph)
+```
+
+Theoph의 뒷부분입니다.
+
+```{r}
+tail(Theoph)
+```
+
+# Results
+
+그림을 그려볼까요
+
+```{r}
+plotTheoph <- Theoph %>% 
+ ggplot(aes(x = Time, y = conc, group = Subject, color = Subject)) +
+ geom_point() +
+ geom_line()
+plotTheoph
+```
+
+Let's draw individually.
+
+```{r}
+plotTheoph +
+ facet_wrap( ~ Subject, ncol = 4)
+```
+
+Theoph is used for treating asthma and the other allergic diseases. [@subintern1]
+
+Omalizumab is also used for treating asthma [@maltby2017omalizumab]
+
+# Discussion
+
+Writing medical papers can be done by Rmarkdown as well as using [Endnote](https://endnote.com/), Mendeley <https://www.mendeley.com/>, refworks, and zotero.
+
+| 이름 | 메뉴 | 가격 |
+| :-- | :-- | --: |
+| 조하혜 | 카페라떼 | 3500원 |
+| 한성필 | 녹차라떼 | 4000원 |
+| 배균섭 | 케이크 | 14000원 |
+
+So now we learned several things.
+
+- R
+- R packages - tidyverse, ggplot2
+- Drawing figures by R
+- Rmarkdown
+
+Next time we will learn these
+
+1. How to use basic NCA R package 
+1. How to use Phoenix WinNonLin software
+1. How to become successful clinical investigator
+
+[Online Figure](https://www.radiokorea.com/images/news/2017/02/17/251890/1.gif)
+
+![Online Figure](https://www.radiokorea.com/images/news/2017/02/17/251890/1.gif)
+
+# Reference
diff --git a/2017-subintern.html b/2017-subintern.html
diff --git a/assets/pk/SUBJID1.png b/assets/pk/SUBJID1.png
diff --git a/assets/pk/SUBJID10.png b/assets/pk/SUBJID10.png
diff --git a/assets/pk/SUBJID11.png b/assets/pk/SUBJID11.png
diff --git a/assets/pk/SUBJID12.png b/assets/pk/SUBJID12.png
diff --git a/assets/pk/SUBJID13.png b/assets/pk/SUBJID13.png
diff --git a/assets/pk/SUBJID14.png b/assets/pk/SUBJID14.png
diff --git a/assets/pk/SUBJID15.png b/assets/pk/SUBJID15.png
diff --git a/assets/pk/SUBJID16.png b/assets/pk/SUBJID16.png
diff --git a/assets/pk/SUBJID17.png b/assets/pk/SUBJID17.png
diff --git a/assets/pk/SUBJID19.png b/assets/pk/SUBJID19.png
diff --git a/assets/pk/SUBJID2.png b/assets/pk/SUBJID2.png
diff --git a/assets/pk/SUBJID20.png b/assets/pk/SUBJID20.png
diff --git a/assets/pk/SUBJID21.png b/assets/pk/SUBJID21.png
diff --git a/assets/pk/SUBJID3.png b/assets/pk/SUBJID3.png
diff --git a/assets/pk/SUBJID4.png b/assets/pk/SUBJID4.png
diff --git a/assets/pk/SUBJID5.png b/assets/pk/SUBJID5.png
diff --git a/assets/pk/SUBJID6.png b/assets/pk/SUBJID6.png
diff --git a/assets/pk/SUBJID7.png b/assets/pk/SUBJID7.png
diff --git a/assets/pk/SUBJID8.png b/assets/pk/SUBJID8.png
diff --git a/assets/pk/SUBJID9.png b/assets/pk/SUBJID9.png
diff --git a/references/myref.bib b/references/myref.bib
@@ -0,0 +1,21 @@
+@article{subintern1,
+ title={New and developing non-adrenoreceptor small molecule drugs for the treatment of asthma},
+ author={Thomson, Neil C},
+ journal={Expert opinion on pharmacotherapy},
+ volume={18},
+ number={3},
+ pages={283--293},
+ year={2017},
+ publisher={Taylor \& Francis}
+}
+
+@article{maltby2017omalizumab,
+ title={Omalizumab treatment response in a population with severe allergic asthma and overlapping COPD},
+ author={Maltby, Steven and Gibson, Peter G and Powell, Heather and McDonald, Vanessa M},
+ journal={Chest},
+ volume={151},
+ number={1},
+ pages={78--89},
+ year={2017},
+ publisher={Elsevier}
+}