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Code related to : O. Mendez-Lucio, M. Ahmad, E.A. del Rio-Chanona, J.K. Wegner, A Geometric Deep Learning Approach to Predict Binding Conformations of Bioactive Molecules

Jupyter Notebook 157 26 Updated Feb 7, 2022

Generate and auto-execute Python scripts in the cli

Python 1,781 137 Updated May 6, 2024

Kinase-focused fragment library

Jupyter Notebook 64 14 Updated Oct 11, 2024

Deployment of the General Atomic and Molecular Electronic Structure System (GAMESS) quantum chemistry code via a Docker container.

8 3 Updated Mar 12, 2018

An open library to work with pharmacophores.

Python 36 10 Updated Jul 6, 2023

Open-source online virtual screening tools for large databases

HTML 10 2 Updated Jul 3, 2024

3D ligand-based pharmacophore modeling

Python 45 16 Updated Jun 22, 2023

Test case for 2024 Winter Internship

3 Updated Nov 16, 2023

This repository contains all the course materials that are used in the "Chemo-informatics and computational drug design" course teaches at the University of Antwerp (Belgium)

Jupyter Notebook 6 3 Updated Oct 2, 2024

Kernelized rank learning for personalized drug recommendation

Jupyter Notebook 16 8 Updated Oct 8, 2018

AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.

Python 330 83 Updated Oct 8, 2024

3D pharmacophore signatures and fingerprints

Python 101 24 Updated May 17, 2024

AI-powered Virtual Screening

Python 79 25 Updated Jun 23, 2023
Python 83 19 Updated Aug 4, 2023

Machine Learning Boosted Docking (HASTEN): Accelerate Structure-based Virtual Screening

Python 34 1 Updated Oct 30, 2023

Interaction Fingerprints for protein-ligand complexes and more

Python 365 68 Updated Aug 26, 2024

Supporting information from "Predicting the Mitochondrial Toxicity of Small Molecules: Insights From Mechanistic Assays and Cell Painting Data" by Marina Garcia de Lomana, Paula Andrea Marin Zapata…

Jupyter Notebook 4 1 Updated Jul 10, 2023

Compilation of chemoinformatics and machine learning techniques

Jupyter Notebook 52 10 Updated Sep 21, 2023

A playbook for systematically maximizing the performance of deep learning models.

26,881 2,233 Updated Jun 18, 2024

Downloads USPTO patents and finds molecules related to keyword queries

Python 45 4 Updated Dec 8, 2023

A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.

Python 83 20 Updated Jun 6, 2019

NWChem: Open Source High-Performance Computational Chemistry

Fortran 501 160 Updated Oct 16, 2024

The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation.

C++ 66 24 Updated Aug 8, 2023

Quantum chemistry and solid state physics software package

Fortran 840 384 Updated Oct 17, 2024

Explainer for black box models that predict molecule properties

Jupyter Notebook 285 42 Updated Jun 2, 2024

SMILES enumeration for QSAR modelling using LSTM recurrent neural networks

Python 217 70 Updated Apr 26, 2022

Generative RNN for molecule de novo design

Python 17 4 Updated Jan 21, 2022

Mass Spectrometry for Small Molecules using Deep Learning

Python 110 41 Updated Jun 30, 2021

The official gpt4free repository | various collection of powerful language models

Python 60,370 13,254 Updated Oct 17, 2024

Systemic Evolutionary Chemical Space Exploration for Drug Discovery

Python 79 18 Updated Oct 13, 2024
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