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@EPPIcenter

EPPIcenter

A systems epidemiology approach to complex infectious disease dynamics: state-of-the-art data collection, molecular technologies, & computational analysis

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  1. dcifer dcifer Public

    Distance for Complex Infections: Fast Estimation of Relatedness (R package)

    R 5 4

  2. moire moire Public

    MOI and Allele Frequency Recovery from Noisy Polyallelic Genetics Data

    C++ 7 3

  3. flexfit flexfit Public

    Flexible format standard curve fitting and data processing (R package)

    R 1

  4. liinc-Ab-dynamics liinc-Ab-dynamics Public

    Source code and data for 'SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay'

    R

  5. THEREALMcCOIL THEREALMcCOIL Public

    A Markov chain Monte Carlo method that estimates complexity of infection and population allele frequencies using SNP data obtained from Sequenom or similar types of SNP assays.

    C 5 7

  6. scale-it-2 scale-it-2 Public

    R 2

Repositories

Showing 10 of 25 repositories
  • mad4hatter Public
    EPPIcenter/mad4hatter’s past year of commit activity
    R 4 13 15 2 Updated Aug 15, 2024
  • sampleDB-rpackage Public
    EPPIcenter/sampleDB-rpackage’s past year of commit activity
    HTML 1 3 17 2 Updated Aug 6, 2024
  • nf-wgs-dsl2 Public
    EPPIcenter/nf-wgs-dsl2’s past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 2, 2024
  • moire Public

    MOI and Allele Frequency Recovery from Noisy Polyallelic Genetics Data

    EPPIcenter/moire’s past year of commit activity
    C++ 7 GPL-3.0 3 4 1 Updated Aug 1, 2024
  • eppicenter.r-universe.dev Public

    The EPPIcenter R-Universe

    EPPIcenter/eppicenter.r-universe.dev’s past year of commit activity
    0 0 0 0 Updated Jul 11, 2024
  • dcifer Public

    Distance for Complex Infections: Fast Estimation of Relatedness (R package)

    EPPIcenter/dcifer’s past year of commit activity
    R 5 4 1 0 Updated May 16, 2024
  • lab-handbook Public

    EPPIcenter Lab Handbook

    EPPIcenter/lab-handbook’s past year of commit activity
    CSS 0 CC0-1.0 1 0 0 Updated May 1, 2024
  • geno_timelines Public

    visualization of longitudinal qPCR or genotyping data

    EPPIcenter/geno_timelines’s past year of commit activity
    0 0 0 0 Updated Mar 19, 2024
  • flexfit Public

    Flexible format standard curve fitting and data processing (R package)

    EPPIcenter/flexfit’s past year of commit activity
    R 1 0 0 0 Updated Aug 2, 2023
  • MicroSPAT Public archive

    MicroSPAT- MicroSatellite Parameterized Analysis Tools A collection of tools for semi-automated analysis of raw capillary electrophoresis (CE) data output by the ABI 3730, and has been designed specifically for working with multi-allelic samples. Developed to improve reproducibility and consistency of microsatellite analysis between analysts.

    EPPIcenter/MicroSPAT’s past year of commit activity
    TypeScript 1 AGPL-3.0 0 0 1 Updated May 31, 2023
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