Skip to content
@AllenNeuralDynamics

Allen Institute for Neural Dynamics

we're hiring: https://alleninstitute.org/careers/

Popular repositories Loading

  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 19 15

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 2

  3. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  4. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  5. dynamic-foraging-task dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 5 4

  6. exa-spim-hardware exa-spim-hardware Public

    5

Repositories

Showing 10 of 242 repositories
  • metadata-chatbot Public

    LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form

    AllenNeuralDynamics/metadata-chatbot’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 17, 2024
  • aind-dynamic-foraging-basic-analysis Public

    compute behavioral metrics and generate basic plottings for the dynamic foraging task

    AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis’s past year of commit activity
    Python 0 MIT 0 4 1 Updated Sep 17, 2024
  • aind-analysis-arch-dynamic-foraging-RL-MLE Public

    capsule that triggers model fitting based on nwb and RL model specs

    AllenNeuralDynamics/aind-analysis-arch-dynamic-foraging-RL-MLE’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 17, 2024
  • parallax Public

    GUI control software for the Modular Insertion System (MIS)

    AllenNeuralDynamics/parallax’s past year of commit activity
    Python 5 MIT 1 0 2 Updated Sep 17, 2024
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 2 MIT 0 24 1 Updated Sep 17, 2024
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 63 (2 issues need help) 3 Updated Sep 17, 2024
  • segmentation-skeleton-metrics Public

    Python package for performing a skeleton-based evaluation of a predicted segmentation of neural arbors. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentation by comparing a set of ground truth skeletons to it.

    AllenNeuralDynamics/segmentation-skeleton-metrics’s past year of commit activity
    Python 4 MIT 0 1 0 Updated Sep 17, 2024
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 19 MIT 15 28 4 Updated Sep 17, 2024
  • foraging-behavior-browser Public

    Foraging behavior browser (streamlit)

    AllenNeuralDynamics/foraging-behavior-browser’s past year of commit activity
    Python 1 MIT 2 12 1 Updated Sep 17, 2024
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 13 2 Updated Sep 17, 2024
View all repositories