Package for causal inference in graphs and in the pairwise settings. Tools for graph structure recovery and dependencies are included.

Tidy time series forecasting

Repository with code and slides for a tutorial on causal inference.

experimental machine learning container

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

Simple App to visualize single cell datasets

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

Dockerfile for running Hadoop on Ubuntu

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

🎓 无需编写任何代码即可轻松创建漂亮的学术网站 Easily create a beautiful academic résumé or educational website using Hugo and GitHub. No code.

Interactively analyze single cell genomic data

CEGS Single cell transcriptomics workshop @ Broad Institute, Sept 2017, leveraging Seurat

See: https://www.iscb.org/ismb2018/3511#am1

Σ sigma.js for R

hand drawings of pineapples

How pineapples develop across human cognitive space

Collection of public scRNA-Seq datasets used by our group

Materials of the working group on reproducible research in Computational Systems Biology of Cancer Group

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

URD - Reconstruction of Branching Developmental Trajectories

Generate cellular maps of differentiation manifolds with complex topologies.

R Interface to D3 Visualizations

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

Reconstruction of complex single-cell trajectories using CellRouter

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

Test genes for Spatial Variation