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LOC18040847 probable choline kinase 3 [ Citrus x clementina ]

Gene ID: 18040847, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18040847
Gene description
probable choline kinase 3
Locus tag
CICLE_v10001575mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18040847 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262201.1 (39104657..39107614)

NW_006262201.1Genomic Context describing neighboring genes Neighboring gene tryptophan aminotransferase-related protein 3 Neighboring gene S-adenosylmethionine carrier 1, chloroplastic/mitochondrial Neighboring gene dehydrogenase/reductase SDR family member 12 Neighboring gene type IV inositol polyphosphate 5-phosphatase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262201 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylcholine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable choline kinase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262201.1 Reference Citrus_clementina_v1.0

    Range
    39104657..39107614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006434472.2 → XP_006434535.1  probable choline kinase 3

    See identical proteins and their annotated locations for XP_006434535.1

    UniProtKB/TrEMBL
    V4T8H8, V4V6U2
    Conserved Domains (2) summary
    PLN02236
    Location:1 → 343
    PLN02236; choline kinase
    cd05157
    Location:38 → 334
    ETNK_euk; Euykaryotic Ethanolamine kinase
Nucleotide Protein
Heading Accession and Version

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