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LOC131148990 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [ Malania oleifera ]

Gene ID: 131148990, updated on 2-May-2024

Summary

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Gene symbol
LOC131148990
Gene description
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Malania oleifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Santalales; Ximeniaceae; Malania
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Genomic context

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See LOC131148990 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_07 current ASM2987363v1 (GCF_029873635.1) 2 NC_080418.1 (25521171..25535134)

Chromosome 2 - NC_080418.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131148988 Neighboring gene uncharacterized LOC131148989 Neighboring gene alpha carbonic anhydrase 8-like Neighboring gene protein disulfide isomerase-like 1-4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080418.1 Chromosome 2 Reference ASM2987363v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin) IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029873635.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2987363v1

Genomic

  1. NC_080418.1 Reference ASM2987363v1

    Range
    25521171..25535134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058098999.1 → XP_057954982.1  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic

Nucleotide Protein
Heading Accession and Version

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