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wars1 tryptophanyl-tRNA synthetase 1 [ Gambusia affinis (western mosquitofish) ]

Gene ID: 122846361, updated on 12-Sep-2024

Summary

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Gene symbol
wars1
Gene description
tryptophanyl-tRNA synthetase 1
See related
EnsemblRapid:ENSGAFG00005000508
Gene type
protein coding
RefSeq status
MODEL
Organism
Gambusia affinis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
Orthologs
human zebrafish all
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Genomic context

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See wars1 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
11
Annotation release Status Assembly LG Location
100 current SWU_Gaff_1.0 (GCF_019740435.1) LG16 NC_057883.1 (26116547..26122068)

Linkage Group LG16 - NC_057883.1Genomic Context describing neighboring genes Neighboring gene brain-enriched guanylate kinase-associated protein-like Neighboring gene WD repeat domain 25 Neighboring gene 5.8S ribosomal RNA Neighboring gene 28S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057883.1 Chromosome LG16 Reference SWU_Gaff_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tryptophan-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tryptophanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tryptophan--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SWU_Gaff_1.0 Primary Assembly

Genomic

  1. NC_057883.1 Reference SWU_Gaff_1.0 Primary Assembly

    Range
    26116547..26122068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044143277.1 → XP_043999212.1  tryptophan--tRNA ligase, cytoplasmic

    Related
    ENSGAFP00005001113.1, ENSGAFT00005001197.1
    Conserved Domains (2) summary
    PLN02486
    Location:91 → 473
    PLN02486; aminoacyl-tRNA ligase
    cd00936
    Location:17 → 66
    WEPRS_RNA; WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates ...
Nucleotide Protein
Heading Accession and Version

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