U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120203309 tryptophan--tRNA ligase, cytoplasmic-like [ Hibiscus syriacus ]

Gene ID: 120203309, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC120203309
Gene description
tryptophan--tRNA ligase, cytoplasmic-like
Locus tag
F3Y22_tig00000340pilonHSYRG00648
Gene type
protein coding
RefSeq status
MODEL
Organism
Hibiscus syriacus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120203309 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024061783.1 (4061000..4065773, complement)

NW_024061783.1Genomic Context describing neighboring genes Neighboring gene probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 Neighboring gene uncharacterized LOC120203324 Neighboring gene calmodulin-7 Neighboring gene transcription factor DIVARICATA-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024061783 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tryptophan-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tryptophanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tryptophan--tRNA ligase, cytoplasmic-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM638163v2 Primary Assembly

Genomic

  1. NW_024061783.1 Reference ASM638163v2 Primary Assembly

    Range
    4061000..4065773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039203622.1 → XP_039059553.1  tryptophan--tRNA ligase, cytoplasmic-like

    UniProtKB/TrEMBL
    A0A6A3D8P2
    Conserved Domains (1) summary
    PLN02486
    Location:15 → 397
    PLN02486; aminoacyl-tRNA ligase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases