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LOC118366222 single-stranded DNA-binding protein, mitochondrial-like [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118366222, updated on 23-Nov-2023

Summary

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Gene symbol
LOC118366222
Gene description
single-stranded DNA-binding protein, mitochondrial-like
See related
EnsemblRapid:ENSOKEG00005051116
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118366222 in Genome Data Viewer
Location:
chromosome: 33
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 33 NC_068453.1 (11298976..11301776, complement)

Chromosome 33 - NC_068453.1Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase iota-like Neighboring gene cAMP responsive element binding protein 3-like 2 Neighboring gene chromosome 33 C12orf56 homolog Neighboring gene uncharacterized LOC118366223

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068453.1 Chromosome 33 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial nucleoid IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA-binding protein, mitochondrial-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068453.1 Reference Oket_V2 Primary Assembly

    Range
    11298976..11301776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035748730.1 → XP_035604623.1  single-stranded DNA-binding protein, mitochondrial-like isoform X2

    Related
    ENSOKEP00005094159.1, ENSOKET00005112219.1
    Conserved Domains (1) summary
    cl09930
    Location:26 → 148
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

  2. XM_035748729.1 → XP_035604622.1  single-stranded DNA-binding protein, mitochondrial-like isoform X1

    Related
    ENSOKEP00005094157.1, ENSOKET00005112217.1
    Conserved Domains (1) summary
    cl09930
    Location:27 → 149
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
Nucleotide Protein Strain
Heading Accession and Version

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