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SCOT Succinyl-CoA:3-ketoacid CoA transferase [ Folsomia candida ]

Gene ID: 110859903, updated on 3-Jul-2024

Summary

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Gene symbol
SCOT
Gene description
Succinyl-CoA:3-ketoacid CoA transferase
See related
EnsemblRapid:LOC110859903
Gene type
protein coding
RefSeq status
MODEL
Organism
Folsomia candida
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola; Entomobryomorpha; Isotomoidea; Isotomidae; Proisotominae; Folsomia
Orthologs
fruit fly all
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Genomic context

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See SCOT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM221717v1 (GCF_002217175.1) Unplaced Scaffold NW_019091220.1 (1508570..1510830, complement)

NW_019091220.1Genomic Context describing neighboring genes Neighboring gene transportin-1 Neighboring gene F-box/WD repeat-containing protein 9 Neighboring gene ran-binding protein 3 Neighboring gene mpv17-like protein 2 Neighboring gene trimeric intracellular cation channel type 1B.1 Neighboring gene gamma-aminobutyric acid type B receptor subunit 2 Neighboring gene SLIT-ROBO Rho GTPase-activating protein 1 Neighboring gene uncharacterized LOC110860045

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019091220 Unplaced Scaffold Reference ASM221717v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables succinyl-CoA:3-oxo-acid CoA-transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ketone body catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Folsomia candida Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM221717v1

Genomic

  1. NW_019091220.1 Reference ASM221717v1

    Range
    1508570..1510830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022108934.2 → XP_021964626.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

    Related
    XP_021964626.1, XM_022108934.2
    Conserved Domains (2) summary
    TIGR02428
    Location:298 → 506
    pcaJ_scoB_fam; 3-oxoacid CoA-transferase, B subunit
    COG1788
    Location:33 → 265
    AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

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