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LOC104116313 isocitrate dehydrogenase [NADP] [ Nicotiana tomentosiformis ]

Gene ID: 104116313, updated on 14-Dec-2023

Summary

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Gene symbol
LOC104116313
Gene description
isocitrate dehydrogenase [NADP]
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana tomentosiformis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104116313 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ntom_v01 (GCF_000390325.2) Unplaced Scaffold NW_008910411.1 (6293..14076, complement)

NW_008910411.1Genomic Context describing neighboring genes Neighboring gene glutaredoxin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008910411 Unplaced Scaffold Reference Ntom_v01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NADP]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana tomentosiformis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntom_v01 Primary Assembly

Genomic

  1. NW_008910411.1 Reference Ntom_v01 Primary Assembly

    Range
    6293..14076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009627137.3 → XP_009625432.1  isocitrate dehydrogenase [NADP]

    Conserved Domains (1) summary
    PLN03065
    Location:33 → 482
    PLN03065; isocitrate dehydrogenase (NADP+); Provisional
Nucleotide Protein
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