Microbial metabolism in diverse environments - Thermotoga sp. RQ2
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Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00004
Pentose phosphate pathway (Pentose phosphate cycle)
M00006
Pentose phosphate pathway, oxidative phase
M00007
Pentose phosphate pathway, non-oxidative phase
M00580
Pentose phosphate pathway, archaea
M00008
Entner-Doudoroff pathway
M00308
Semi-phosphorylative Entner-Doudoroff pathway
M00309
Non-phosphorylative Entner-Doudoroff pathway
Other carbohydrate metabolism
M00550
Ascorbate degradation
M00373
Ethylmalonyl pathway
M00740
Methylaspartate cycle
Energy metabolism
Carbon fixation
M00165
Reductive pentose phosphate cycle (Calvin cycle)
M00168
CAM (Crassulacean acid metabolism), dark
M00169
CAM (Crassulacean acid metabolism), light
M00172
C4-dicarboxylic acid cycle, NADP - malic enzyme type
M00171
C4-dicarboxylic acid cycle, NAD - malic enzyme type
M00170
C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type
M00173
Reductive citrate cycle (Arnon-Buchanan cycle)
M00376
3-Hydroxypropionate bi-cycle
M00375
Hydroxypropionate-hydroxybutylate cycle
M00374
Dicarboxylate-hydroxybutyrate cycle
M00377
Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)
M00579
Phosphate acetyltransferase-acetate kinase pathway
M00620
Incomplete reductive citrate cycle
Methane metabolism
M00567
Methanogenesis
M00357
Methanogenesis
M00356
Methanogenesis
M00563
Methanogenesis
M00358
Coenzyme M biosynthesis
M00608
2-Oxocarboxylic acid chain extension
M00174
Methane oxidation, methanotroph
M00346
Formaldehyde assimilation, serine pathway
M00345
Formaldehyde assimilation, ribulose monophosphate pathway
M00344
Formaldehyde assimilation, xylulose monophosphate pathway
M00378
F420 biosynthesis, archaea
M00422
Acetyl-CoA pathway
Nitrogen metabolism
M00175
Nitrogen fixation
M00531
Assimilatory nitrate reduction
M00530
Dissimilatory nitrate reduction
M00529
Denitrification
M00528
Nitrification
M00804
Complete nitrification, comammox
M00973
Anammox
Sulfur metabolism
M00176
Assimilatory sulfate reduction
M00596
Dissimilatory sulfate reduction
M00595
Thiosulfate oxidation by SOX complex
Amino acid metabolism
Serine and threonine metabolism
M00033
Ectoine biosynthesis
M00919
Ectoine degradation
Lysine metabolism
M00956
Lysine degradation, bacteria
M00957
Lysine degradation, bacteria
M00960
Lysine degradation, bacteria
Aromatic amino acid metabolism
M00533
Homoprotocatechuate degradation
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00810
Nicotine degradation, pyridine pathway
M00811
Nicotine degradation, pyrrolidine pathway
M00622
Nicotinate degradation
M00836
Coenzyme F430 biosynthesis
Xenobiotics biodegradation
Aromatics degradation
M00538
Toluene degradation
M00537
Xylene degradation
M00419
Cymene degradation
M00547
Benzene/toluene degradation
M00548
Benzene degradation
M00551
Benzoate degradation
M00637
Anthranilate degradation
M00568
Catechol ortho-cleavage
M00569
Catechol meta-cleavage
M00539
Cumate degradation
M00543
Biphenyl degradation
M00544
Carbazole degradation
M00418
Toluene degradation, anaerobic
M00541
Benzoyl-CoA degradation
M00540
Benzoate degradation
M00534
Naphthalene degradation
M00638
Salicylate degradation
M00624
Terephthalate degradation
M00623
Phthalate degradation
M00636
Phthalate degradation
M00878
Phenylacetate degradation
M00545
Trans-cinnamate degradation
M00915
Caffeine degradation
KGML
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