+F Repair protein KO
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DNA Repair and Recombination Proteins - Candidatus Phytoplasma australiense
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E PA0521 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D PA0520 dut; DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E PA0521 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PA0823 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
E PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E PA0699 uvrA; Excinuclease ATPase subunit A K03701 uvrA; excinuclease ABC subunit A
E PA0453 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
E PA0452 uvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
E PA0693 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F PA0665 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F PA0664 rpoC; DNA-directed RNA polymerase beta chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F PA0560 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F PA0625 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta
F PA0106 rpoZ; Putative DNA-directed RNA polymerase,omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E PA0535 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E PA0541 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E PA0002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E PA0145 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E PA0168 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E PA0623 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E PA0693 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PA0814 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein
E PA0151 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E PA0724 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein
E PA0317 Putative prophage-derived single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E PA0408 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein
E PA0791 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein
E PA0250 dam; Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E PA0123 priA; Primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F PA0214 gyrA; DNA gyrase alpha subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F PA0213 gyrB; DNA gyrase beta subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F PA0634 topA; Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F PA0683 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0198 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0330 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F PA0042 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0321 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0376 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0230 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0432 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0738 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0070 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0422 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PA0397 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F PA0804 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F PA0699 uvrA; Excinuclease ATPase subunit A K03701 uvrA; excinuclease ABC subunit A
F PA0453 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D PA0814 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein
D PA0151 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PA0724 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein
D PA0317 Putative prophage-derived single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PA0408 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein
D PA0791 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D PA0520 dut; DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PA0056 nrdA; Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PA0112 nrdF; Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D PA0021 Phosphoesterase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D PA0019 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024