KEGG   PATHWAY: sphp00260
Entry
sphp00260                   Pathway                                
Name
Glycine, serine and threonine metabolism - Sphingopyxis sp. 113P3
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
sphp00260  Glycine, serine and threonine metabolism
sphp00260

Module
sphp_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sphp00260]
sphp_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:sphp00260]
sphp_M00033  Ectoine biosynthesis, aspartate => ectoine [PATH:sphp00260]
sphp_M00621  Glycine cleavage system [PATH:sphp00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Sphingopyxis sp. 113P3 [GN:sphp]
Gene
LH20_14340  aspartate kinase [KO:K00928] [EC:2.7.2.4]
LH20_15530  aspartate kinase [KO:K00928] [EC:2.7.2.4]
LH20_16540  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
LH20_17620  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
LH20_10080  serine kinase [KO:K02204] [EC:2.7.1.39]
LH20_09650  threonine synthase [KO:K01733] [EC:4.2.3.1]
LH20_02370  threonine aldolase [KO:K01620] [EC:4.1.2.48]
LH20_07540  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LH20_21040  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
LH20_01560  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
LH20_01565  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
LH20_07915  phosphoserine phosphatase [KO:K01079] [EC:3.1.3.3]
LH20_19255  hypothetical protein [KO:K00060] [EC:1.1.1.103]
LH20_11630  5-aminolevulinate synthase [KO:K00643] [EC:2.3.1.37]
LH20_14445  glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
LH20_14440  glycine dehydrogenase subunit 2 [KO:K00283] [EC:1.4.4.2]
LH20_14460  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
LH20_16155  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LH20_12780  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LH20_14455  glycine cleavage system protein H [KO:K02437]
LH20_14005  CDP-diacylglycerol O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
LH20_03845  sarcosine oxidase subunit alpha [KO:K00302] [EC:1.5.3.24 1.5.3.1]
LH20_03835  sarcosine oxidase subunit beta [KO:K00303] [EC:1.5.3.24 1.5.3.1]
LH20_03850  sarcosine oxidase [KO:K00305] [EC:1.5.3.24 1.5.3.1]
LH20_03840  sarcosine oxidase subunit delta [KO:K00304] [EC:1.5.3.24 1.5.3.1]
LH20_15415  serine dehydratase [KO:K01752] [EC:4.3.1.17]
LH20_03865  serine dehydratase [KO:K01752] [EC:4.3.1.17]
LH20_11610  pyridoxal-5'-phosphate-dependent protein [KO:K01754] [EC:4.3.1.19]
LH20_03020  threonine dehydratase [KO:K01754] [EC:4.3.1.19]
LH20_12405  trpA; tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
LH20_12395  tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
LH20_15515  diaminobutyrate--2-oxoglutarate aminotransferase [KO:K00836] [EC:2.6.1.76]
LH20_15510  proteinase inhibitor I4 serpin [KO:K06718] [EC:2.3.1.178]
LH20_15520  ectoine synthase [KO:K06720] [EC:4.2.1.108]
LH20_15525  ectoine hydroxylase [KO:K10674] [EC:1.14.11.55]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
sphp00010  Glycolysis / Gluconeogenesis
sphp00020  Citrate cycle (TCA cycle)
sphp00230  Purine metabolism
sphp00250  Alanine, aspartate and glutamate metabolism
sphp00270  Cysteine and methionine metabolism
sphp00290  Valine, leucine and isoleucine biosynthesis
sphp00300  Lysine biosynthesis
sphp00330  Arginine and proline metabolism
sphp00460  Cyanoamino acid metabolism
sphp00470  D-Amino acid metabolism
sphp00564  Glycerophospholipid metabolism
sphp00620  Pyruvate metabolism
sphp00630  Glyoxylate and dicarboxylate metabolism
sphp00640  Propanoate metabolism
sphp00680  Methane metabolism
sphp00860  Porphyrin metabolism
sphp00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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