KEGG   PATHWAY: sphp00020
Entry
sphp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingopyxis sp. 113P3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sphp00020  Citrate cycle (TCA cycle)
sphp00020

Module
sphp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sphp00020]
sphp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sphp00020]
sphp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sphp00020]
sphp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sphp00020]
sphp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sphp00020]
Other DBs
GO: 0006099
Organism
Sphingopyxis sp. 113P3 [GN:sphp]
Gene
LH20_09890  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
LH20_01455  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LH20_14015  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LH20_16165  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
LH20_16160  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
LH20_16155  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LH20_12780  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LH20_12660  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LH20_12655  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LH20_16170  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
LH20_02180  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
LH20_13705  fumarate reductase [KO:K00239] [EC:1.3.5.1]
LH20_16200  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
LH20_13715  succinate dehydrogenase [KO:K00241]
LH20_13710  succinate dehydrogenase [KO:K00242]
LH20_02445  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LH20_01135  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LH20_16175  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LH20_16800  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LH20_07700  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
LH20_07705  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
LH20_12785  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sphp00010  Glycolysis / Gluconeogenesis
sphp00053  Ascorbate and aldarate metabolism
sphp00061  Fatty acid biosynthesis
sphp00071  Fatty acid degradation
sphp00190  Oxidative phosphorylation
sphp00220  Arginine biosynthesis
sphp00250  Alanine, aspartate and glutamate metabolism
sphp00280  Valine, leucine and isoleucine degradation
sphp00350  Tyrosine metabolism
sphp00470  D-Amino acid metabolism
sphp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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