Panicum virgatum (switchgrass): 120672125
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Entry
120672125 CDS
T07260
Name
(RefSeq) tryptophan--tRNA ligase, chloroplastic/mitochondrial-like isoform X1
KO
K01867
tryptophanyl-tRNA synthetase [EC:
6.1.1.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120672125
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120672125
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120672125
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.2 tryptophan---tRNA ligase
120672125
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (G)
120672125
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120672125
Prokaryotic type
120672125
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1b
Motif
Other DBs
NCBI-GeneID:
120672125
NCBI-ProteinID:
XP_039808356
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Position
5N:complement(56385222..56390787)
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AA seq
431 aa
AA seq
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MSRALLAHVLHRPPLLASRSGADARGLLASRIHPLRRLNCSAAEAAPGPTEEAPASTARK
KRVVSGVQPTGMVHLGNYLGAIKNWVALQDLYETFFFIVDLHAITLPYDAPELSKATRST
AAIYLACGIDSSKASIFVQSHVRAHVELMWLLSSSTPIGWLNRMIQFKEKSRKAGDENVG
VALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREIAERVNNLYGGRKWKKLGGRGGN
LFKVPEALIPLAGARVMSLTDGLSKMSKSAASDQSRINLLDPKDVIVNKIKRCKTDSFPG
FSLKLFTSTFSLPNSSIRKKAHGIEFVYSSLEFDNPERPECRNLFSIYQIITGKTKEEVV
SECQDMNWGTFKTTLTDALIEHLQPIQARYEEIMSDPGYLDNILLEGAGKASEIADITLN
NVYQAMGFLRR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcgcgctgctcgcccatgtcctccaccgcccgccgctcctcgcctcgaggagt
ggcgctgacgcccgaggactgctcgcctctcgcatccaccctctccgtcgtctcaattgc
agcgcggccgaagcggctcccggccccaccgaggaggcgcctgcttctacggcgaggaag
aaaagagtagtttctggtgtacagccaacaggaatggttcaccttggaaattatcttggt
gctattaagaattgggttgcgcttcaggatttatacgagacattctttttcatcgtggac
ctgcacgcaattactttaccatatgatgcaccagagctatccaaagcaacaagaagcact
gctgcaatatatctggcatgtggtattgacagctccaaggcttctatttttgtacaatct
catgtccgtgctcatgttgagttgatgtggctgttgagttcttctactcctattggctgg
ctcaacagaatgatccagttcaaagagaagtcacgcaaggcgggtgatgaaaatgtcggg
gtggcacttctgacttatcctgttctaatggcttctgacatccttttgtaccagtccgac
ttggtacctgttggtgaagatcagacacaacatttagaattaactcgtgaaattgctgag
cgtgtaaataatctctacggtggaagaaagtggaagaagctgggagggagaggtggaaat
ctatttaaggttcctgaagcccttattcctctagctggggctcgtgttatgtccttaacc
gatggtctatccaagatgtccaaatctgccgcttcagatcagtctcgtatcaatcttctt
gacccaaaagatgtgattgtcaataagatcaagcgctgcaaaactgactcgttcccaggg
ttttctctcaaactattcacctctactttctctctacctaattcctccatccgtaagaaa
gctcatggcattgaattcgtatattccagcttggagtttgacaacccagagaggccggaa
tgcagaaatcttttctcgatctaccagattattactgggaagactaaagaggaagttgtt
agcgagtgccaagatatgaactgggggacattcaagactacccttacagatgctttgatt
gagcatttgcaacctattcaggcacgttatgaggagataatgtctgatccaggctatttg
gataatattcttttggaaggagcaggaaaagcttctgagatagcggacatcaccctcaac
aatgtataccaagccatgggtttcttgcgcagatag
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