KEGG   PATHWAY: prt00630
Entry
prt00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Planococcus rifietoensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
prt00630  Glyoxylate and dicarboxylate metabolism
prt00630

Module
prt_M00012  Glyoxylate cycle [PATH:prt00630]
prt_M00621  Glycine cleavage system [PATH:prt00630]
Other DBs
GO: 0046487 0043648
Organism
Planococcus rifietoensis [GN:prt]
Gene
AUC31_15990  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
AUC31_13530  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
AUC31_03660  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AUC31_03600  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
AUC31_15985  malate synthase A [KO:K01638] [EC:2.3.3.9]
AUC31_03460  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AUC31_09410  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
AUC31_03470  citrate synthase [KO:K01659] [EC:2.3.3.5]
AUC31_01275  citrate synthase [KO:K01659] [EC:2.3.3.5]
AUC31_01540  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AUC31_00445  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AUC31_13980  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AUC31_03455  enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
AUC31_02230  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
AUC31_02225  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
AUC31_02255  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AUC31_02250  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AUC31_12620  catalase [KO:K03781] [EC:1.11.1.6]
AUC31_13375  catalase [KO:K03781] [EC:1.11.1.6]
AUC31_08480  catalase [KO:K03781] [EC:1.11.1.6]
AUC31_13540  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
AUC31_15115  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AUC31_15130  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AUC31_15125  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AUC31_12385  nucleosidase [KO:K01091] [EC:3.1.3.18]
AUC31_00385  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AUC31_14095  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AUC31_02405  glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
AUC31_02400  glycine dehydrogenase [KO:K00283] [EC:1.4.4.2]
AUC31_02410  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AUC31_16745  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUC31_02275  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUC31_02110  acetoin dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUC31_04325  glycine cleavage system protein H [KO:K02437]
AUC31_15305  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
AUC31_05740  glycerate kinase [KO:K00865] [EC:2.7.1.165]
AUC31_11255  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
AUC31_15085  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AUC31_04815  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
prt00010  Glycolysis / Gluconeogenesis
prt00020  Citrate cycle (TCA cycle)
prt00030  Pentose phosphate pathway
prt00053  Ascorbate and aldarate metabolism
prt00071  Fatty acid degradation
prt00230  Purine metabolism
prt00250  Alanine, aspartate and glutamate metabolism
prt00260  Glycine, serine and threonine metabolism
prt00620  Pyruvate metabolism
prt00710  Carbon fixation by Calvin cycle
prt00750  Vitamin B6 metabolism
prt00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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